Showing posts with label cattle. Show all posts
Showing posts with label cattle. Show all posts

Friday, May 1, 2026

May 2026 science summary

Jon and Thor


Hi,

I'm pretty behind on even screening new research - if you have a favorite paper from the past few months please feel free to pitch it to me along with why it's worth covering! This month I've got a paper on an interesting ecological engineering approach to wetland restoration, one on causes of fire in the Gran Chaco, and one on interest among ranchers in the Brazilian Pantanal in sustainable certification.


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WETLAND RESTORATION:
Petrakis et al. 2026 uses satellite imagery to document the degradation and subsequent restoration of a spring-fed wetland in an arid part of New Mexico. It dried out after water diversion and use for irrigation in the 1940s, and from 2008-2015 a series of changes were made to increase water retention (the so-called "Zeedyk" approach named after the last author on the paper). This included plugging diversion ditches / channels, widening channels, and adding many small rock dams all of which allow for slower flow and more water retention and infiltration. They actually doubled the area of the original wetland via restoration. On the one hand, these structures would impede connectivity for aquatic organisms, but on the other so does the absence of water. I can see a case being made for these kinds of structures in ephemeral headwaters in particular.


FIRE / CHACO:
Baumann et al. 2026 look at 40 years of fire history in the Gran Chaco (2/3 of which burned in that time) to find key drivers. 70% of all fires originated from clearing habitat for agriculture (91% in Bolivia), followed by burning existing cropland or pastures (28%, 7% in Bolivia). Fire was most common when initially clearing land, followed by regular burning of pastures, whereas regular use of fire was uncommon for croplands. Drought led to fires burning almost 5% more land than in non-drought years, which was significant but much less than I expected. One reason is that as a dry ecosystem, fuel loads are low, especially after longer droughts or other fires. The authors note that "other fires" (not from clearing land or burning ag lands) still were often set by humans, and some fires classified as "other" still originated from pasture fires before extending into forests.


PANTANAL / CATTLE SUSTAINABILITY:
Nogueira et al. 2026 interviewed ranchers in the Pantanal about beliefs and interest in adopting a sustainable certification scheme. Interviewees felt a lot of pride and identity as Pantaneiros, their unique ability to ranch effectively, and their sustainability. This is fairly universal in similar research I’ve seen of ranchers across the Americas. The biggest driver of them being willing to try for sustainable certification is direct support (likely both technical and financial – they report sustainable practices are both difficult and expensive, despite ALSO believing they’re already sustainable). The second biggest driver is how open they say they are to new ideas of managing their property, followed by being familiar with FPS (the certification scheme in question). Recognition of Pantaneiro culture had the smallest impact on intention to adopt of the four factors that helped to some degree. Belief that the government does not currently support sustainable cattle ranching was the biggest predictor of opposition to adopting sustainable certification.


REFERENCES:
Baumann, M., Maillard, O., Gasparri, I., Burton, J., Gavier Pizarro, G., & Kuemmerle, T. (2026). Fire dynamics in the South American Chaco and their link to agriculture and drought. Nature Sustainability. https://doi.org/10.1038/s41893-026-01793-z

Nogueira, D. G., de Olivera Roque, F., Borges, J. A. R., Tomas, W. M., Mills, M., Jagadish, A., Nunes, A. V., Leimgruber, P., Legh‐Smith, C., Marchini, S., & Morais Chiaravalloti, R. (2026). What Drives Conservation Adoption? Social Science Insights from Cattle Ranchers in the Pantanal Wetland, Brazil. Conservation Letters, 19(2), 1–9. https://doi.org/10.1111/con4.70033

Petrakis, R. E., Norman, L. M., McGraw, M., Carson, S., Sponholtz, C., Weber, C., & Zeedyk, W. D. (2026). Regreening, restoring, and reconnecting a southwestern wetland ecosystem – the Zeedyk wetland. Remote Sensing Applications: Society and Environment, 42(November 2025), 101964. https://doi.org/10.1016/j.rsase.2026.101964


Sincerely,

Jon


P.s. The adorable chunky puppy in the photo is Thor - until very recently he was one of almost 100 puppies currently available for adoption via Homeward Trails in addition to many quality adult dogs (already potty trained and no surprises about their eventual personality). He has been snapped up but as I write this his similar brother Loki and sister Freyja are somehow still up for grabs! This pic was taken at a puppy party I volunteered at which both raises funds for the shelter and helps pups find homes.

Thursday, January 2, 2025

Best of 2024 science summaries

Sarah and Jon before Christmas caroling

Happy New Year,


How better to celebrate the new year than with old science?!

As usual, here are my favorite 15 reruns (article summaries) from 2024, plus a few of my favorite bits about AI since I keep getting requests for more of that:

Upset at the articles I missed? Please email me your own favorites from 2024 and I'll do what I can to include them in upcoming summaries.

As always people can sign up to receive these summaries at http://bit.ly/sciencejon (no need to email me). On with the reruns!


CLIMATE CHANGE
OK, for years people have been hyping the potential of a kind of seaweed (Asparagopsis) to reduce methane emissions in cattle. But the in vitro evidence was mixed - with potential toxicity and downsides a concern if the dose wasn't just right. George et al 2024 is a live trial with good news! They found methane emissions from cattle given an Asparagopsis additive were cut roughly in half compared to control, with 6.6% higher weight gain per unit of feed and no substantial impacts on quality or health (fat color maybe a bit better, tenderness maybe a bit worse). The methane reduction peaked at day 21 and declined afterwards, but since most cattle are in feedlots only ~3 months (ranging from 1.5-4) the decline after day 100 is pretty moot. That's a lot of potential! The only potential downsides were ~50% higher bromine residues in kidney and muscle (I couldn't quickly find guidance on safe levels). Caveats: 1) there were no conflicts declared but the authors appear to almost all work as feedlot consultants and it's single rather than double-blinded, 2) in the US the feedlot phase is only about 15% of the lifecycle emissions of a cow (and of that, some is from growing crops and nitrous oxide) so TOTAL impact on CO2e / kg beef is not as dramatic. Overall my take is 1) this should absolutely be tested and replicated more - anything that reduces the very high carbon of beef is worth pursuing. BUT 2) if this is marketed as "green beef" or license to avoid reductions, it could be net harmful for the climate. and 3) IF spraying this solution on grass worked similarly and didn't inhibit development of calves, the impact could be much higher (since ~80%ish of a cow's life is grazing prior to feedlot, and methane emissions are higher on grass than feed). So let's test that too (note: there’s a new study claiming a ~1/3 reduction in methane during grazing via seaweed supplements that I haven’t reviewed yet). There's a blog about this at https://www.theguardian.com/australia-news/article/2024/aug/18/feeding-seaweed-supplement-to-cattle-halved-methane-emissions-in-australian-feedlot-study-finds

Trencher et al, 2024 is an analysis of the quality of carbon credits on the voluntary market. They focus on the 20 companies retiring the most credits between 2020-2023 (134 million metric tons CO2e), which is 20% of all global retirements on the three registries (see Fig 1 for company list). They found 87% of credits have a high risk of not providing real additional reductions (6% were low risk, most of the rest was medium), and 97% of credits focused on avoiding emissions rather than removal. Note that they classified all REDD+ (reducing deforestation and/or degradation) as high risk given that they have often 1) overestimated additionality, 2) not stopped deforestation, and/or 3) displaced deforestation elsewhere (aka 'leakage'). They also classify large-scale renewable energy as high-risk, since the price of credits is not typically the decisive factor in those projects (they are often built w/ or w/o credits) and they are often build in countries w strong government support for renewable energy. They also found that companies strongly prefer the cheapest credits (which creates demand for lower-quality offsets) often from older projects, although some companies have paid a lot more for REDD projects. The authors call for more regulation of the voluntary market, and for companies not using voluntary credits to support claims of offsetting emissions.

 
CONSERVATION IMPACT:
Langhammer et al. 2024 is the big splashy new Science paper looking at the global impact of conservation. It's a meta-analysis of trials comparing interventions to counterfactuals (similar areas w/o action). They found conservation helps 2/3 of the time (45% of trials led to absolute improvement in biodiversity, 21% reduced biodiversity loss), but is harmful 1/3 of the time (in 21% of trials biodiversity declined more due to conservation, in 12% it improved less due to conservation), and only 2% of trials showed no difference). That's not a great track record - I'd hoped net harm would be rare (1/3 is very high!), and just over half the time we're losing biodiversity despite trying to stop it. Fig 2 helpfully shows how impact varies by type of intervention: protected areas show the smallest positive effect on average, and invasive species removal shows the largest positive effect. I'd ignore "sustainable use of species" b/c it's a weirdly broad category that somehow only included 4 papers on wildlife hunting and 1 on fishing, although a few fishing papers are included under protected areas (details in the supplement - this makes me think their sample is not representative of conservation broadly). While the authors conclude conservation is working and we should do more of it, I bet if this was a paper on medical efficacy we'd consider interventions that are 2/3 helpful and 1/3 harmful an urgent cry to improve efficacy BEFORE we try to scale work that is so often ineffective or harmful. Would you send your kids to a school where 1/3 of students learned less than kids not in school at all?


EVIDENCE ASSESSMENTS / SCIENTIFIC REPRODUCIBILITY:
Scientists often complain policy makers don't follow our recommendations (or even read them). But Brisco et al. 2023 finds that recommendations from meta-analyses tend to change over time as research continues. They looked at 79 papers (121 meta-analyses) and found that over time 93% of analyses either had a big change in effect size (+- 50% or more, see Fig 2 for examples) or change in statistical significance (see Fig 3). The key results are in Fig 5, which I find pretty confusing. Results staying consistently statistically significant w/ each study is rare, and ~25% of analyses showed a reversal in effect (from positive to negative or vice versa). Those reversals are the change we care the most about since it means action can backfire. BUT if you ignore the studies that were never statistically significant (seems safe) it's only 12% of analyses that flip, and if you also ignore the ones that lost significance (meaning the reversal is less meaningful) it goes down to 11%. That's still pretty bad though - 1 time out of 9 the scientific recommendation might lead to the opposite outcome we intend. They recommend scientists use cumulative meta-analyses to look for trends, and the reminder that we're often wrong reinforces the need for adaptive management and an empirical approach to seeing what works in a given context.
 
 
FIRE:
Pivello et al. 2021 is a good comprehensive overview of wildfire across Brazil. It's long and dense so hard to summarize! Natural fires are most common at the beginning of the wet season when lightning ignites accumulated dry vegetation. Fig 1 has an overview of fire by biome: the Amazon followed by Cerrado have the most fires; the Pantanal and Cerrado typically have the highest % burned (they are both fire-dependent, as is the Pampas, see Fig 2), and in 2020 the Pantanal had roughly triple the % burned and fire density as others. Pollen evidence (from a different study, Power et al. 2016) indicates fire activity in the Pantanal peaked about 12,000 years ago (people have only lived there for about 8,000 years, and grazed cattle for ~250). Introducing cattle has caused a shift from burning every 3-6 years (mostly in the beginning or sometimes end of the wet season) to burning every year or two during a relatively dry part of the wet season (see Fig 6). Conversely, fire suppression in the Cerrado has also driven woody encroachment of savannas. In the Amazon and Atlantic Forest, natural fire is rare and very infrequent, making fire especially harmful as species are not adapted to it. The combination of deforestation and drought make it much easier for fire to spread (and Amazonian deforestation means more drought in the Pantanal). 1/3 of the forest in the Amazon from 2003-2019 were associated w/ deforestation. Indigenous people mostly used fires in small areas, but since European colonization it's used at larger scales to clear land permanently (or alternately suppressed, see Fig 7 for a nice timeline of fire landmarks). Integrated fire management (IFM) is uncommon (except a few federal protected areas, mostly in the Cerrado). Only Minas Gerais and Roraima states have IFM laws. The authors recommend: 1) fire management policy should include climate mitigation and poverty reduction to reduce fire risk; 2) better fire monitoring and management systems; 3) filling knowledge gaps around drivers of fire, how fire impacts wetlands, human dimensions of fire, impacts of different fire regimes on grazing productivity and carbon; 4) better enforcement of illegal fire use (including more resources); 5) including local communities in developing fire management plans, and 6) national and state level fire policies with adequate resources for implementation (including data collection and sharing, and clear and simple rules about fire use).
 
Balch et al. 2024 found that over the last 20 years fires in the US have been spreading faster. In the Western US over 20 years the average peak daily growth rate (the average of the fastest each fire grew on a given day) increased 2.5 times (in California they increased by 4 times). The fastest 3% of fires nationally (spreading more than 1,620 ha in a day) destroyed between 78-89% of the buildings lost to fire (the paper lists each number in different section for the same stat). I’ve heard a lot more about severity and frequency and extent of fire, but thinking about speed is also important as faster fires are harder to respond do, and may make really smooth coordination increasingly important. Increases in drought conditions and potential increases in high winds could make this worse over time. 


FRESHWATER:
Flitcroft et al. 2023 notes that counting effective freshwater protection globally is really hard (as is getting effective protection to happen). Fig 1 has a nice summary of how restrictive different protection mechanisms are. They also call for both better management of existing protected areas (PAs) to include freshwater conservation needs, and protections for freshwater in new places. While issues around data resolution and data availability continue to pose challenges to freshwater conservation, they argue that more explicit consideration of both freshwater and terrestrial objectives in any area-based protection is a good start.
 
Jasechko et al. 2024 is a global assessment of groundwater levels since 2000 (using 170,000 wells and 1,700 aquifers) and comparing them to earlier trends for ~1/3 of those aquifers. They found 36% of aquifers were drying up (water level dropping deeper by 0.1 m / yr or more), and 6% of aquifers were improving (water level rising 0.1 m / yr or more), w/ 58% of aquifers not changing quickly in this century. 30% of the aquifers where they had 40 years of data declined faster in the 21st century than the 20 years prior (see Fig 3), but in 49% of those aquifers declines slowed or reversed. Unsurprisingly the trend is worst in drylands w/ farmland, and groundwater deepening is globally correlated w/ low precipitation, high evapotranspiration, and extent of agriculture. See Fig 1 and 2 for global map of trends, highlighting hotspots of decline in CA, the US high plains, Iran, India, central Chile, and a few others. There's a news article about the study at https://www.cnn.com/2024/01/24/climate/groundwater-global-study-scn/index.html

Wang et al. 2024 looks at how climate change has changed the seasonality of river flow (how much it varies month to month, including frequency of droughts and floods). They found that ~14% of long-term river gauges show changes in seasonality over the last 50 years that isn't driven by changing annual precipitation. The surprise is that seasonality is mostly DECREASING counter to the narrative of more floods and droughts (see Fig 1 for a map of results, and Fig 2 which adds detail). In their figures brown means less seasonality (more even flow): "L+" means low flows become higher flows (NOT higher frequency of drought) while "H-" means floods see lower flood volume (again NOT lower frequency of flood events). You'll see most of North America, most of Europe, and some of Russia have seen reduced seasonality in recent decades. Blue means MORE seasonality, focused in: SE Brazil, some European countries, and in the US the SE and some of the Rocky Mountains. The explanation is worth reading in full, but in brief: 1) snow melting earlier means less runoff from snow at the same time as spring rains, 2) early spring greening means more water gets transpired, 3) it's more complicated in places not dominated by snowmelt.
 

HORIZON SCANNING / EMERGING ISSUES:
I realized I've only rarely reviewed Bill Sutherland's annual "horizon scan" article listing 15 emerging conservation issues that potentially deserve to be better-known. Last year (I just read the 2024 version a year late) they used artificial intelligence to generate some of the ideas but none made the cut. Here's the final list so you can decide if any are worth looking up (and here’s the brand new 2025 paper if you want to catch up):
1. New sources of hydrogen for energy (mining or electrolysis instead of natural gas),
2. Decarbonized ammonia (making fertilizer w/ lower carbon emissions but could increase fertilizer wasted),
3. Feeding people and/or animals w/ cultivated bacteria,
4. Light-free artificial photosynthesis (yes, it's as weird as it sounds) for indoor ag,
5. Enhanced rock weathering at scale (putting rock dust on croplands to sequester carbon),
6. Potential global declines in earthworm populations (more data is needed to see if UK decline is representative),
7. Ecoacoustics to monitor soil ecology (testing how meaningful soil sounds are for estimating things like biodiversity and water flow),
8. Wildfire affecting El Niño and La Niña phase (aerosols leading to the La Niña phase),
9. Benchtop DNA printers (potential to eventually allow guerilla genetic engineering),
10. Better predicting chemical toxicity from early data,
11. a skyscraper city planned in Saudi Arabia that birds could crash into when migrating from Europe to Africa.,
12. Sea urchin die-offs (possibly from disease) leading to algal overgrowth on corals and other marine ecosystems,
13. Ocean-based carbon removal (from the air or dissolved in water to stable forms),
14. Warming "twilight zones" (200-1000m below sea surface) affecting global nutrient and carbon cycles, and
15. Melting Antarctic ice changing deep sea currents.


MAMMALS:
Greenspoon et. al 2023 is an attempt to estimate the biomass of all wild mammals on earth (combined), arriving at 60 Mt total: 20 Mt (million metric tons) on land (half from "even-hoofed" mammals, see FIg 2), and 40 Mt in oceans (23 Mt of which comes from baleen whales). But the kicker is that they estimate human biomass at 390 Mt, and livestock biomass at 630 Mt (420 Mt from cattle: which is more than all humans plus all wild land mammals). Fig 4 awkwardly tries to compare all mammal biomass on earth, showing how wild species have been squeezed. The wild mammal estimates mostly come from the IUCN red list which skews towards expert assessments of more threatened spp., and the numbers won't be "right" for several reasons (these estimates are hard, and the data are highly limiting). But it seems solid that humans and livestock substantially outweigh wild mammals.
There's a good critique of the paper (arguing that Greenspoon et al. underestimate biomass by a factor of 5.5) by Santini et al. here https://www.pnas.org/doi/10.1073/pnas.2308958121 and a reply from the Greenspoon authors pointing out why the methods used in the critique are also (differently) flawed: https://www.pnas.org/doi/10.1073/pnas.2316314121
 

MIGRATORY SPECIES / WILDLIFE CONNECTIVITY:
The new State of the World's Migratory Species report (UNEP-WCMC 2024) has an update on how the 1,189 migratory species in CMS are doing. Almost half (44%) are in decline (with 22% at risk of extinction, including 97% of listed fish spp), 1/3 are stable, and the rest are split between improving and unknown. The report also notes that 399 spp not even listed in CMS (including ~200 fish spp, ~150 bird spp, and ) are at risk (from critically endangered to near threatened). See Fig 2.10b for an overview of which migratory species CMS leaves out (including horseshoe crabs!) and 2.10c for the subset at risk. Unsurprisingly the main threats are habitat loss (along w/ degradation and fragmentation) and overexploitation (hunting and fishing). Recommendations on page ix-xi are familiar and unsurprising (albeit important). There's a blog about this paper with key highlights at: https://www.unep.org/news-and-stories/press-release/landmark-un-report-worlds-migratory-species-animals-are-decline-and
 
Littlefield et al. 2024 (I'm a minor author) examines how wildlife road crossings can be beneficial to help species adapt to climate change. We recommend that when siting crossings we should consider a) current wildlife movements, AND expected short-term and long-term shifts in species range and migrations due to b) climate change AND c) human land use change (expansion of housing, ag, etc.). We show how doing this was accomplished for elk in Colorado.
For this to work well, diversion fencing is important to channel wildlife to crossings, and avoiding future fragmentation is key. The paper is open access. There's a press release for the paper here: https://fish.freeshell.org/publications/Littlefield2024-PressRelease.pdf


POLLINATORS:
Li et al. 2024 is a methods paper about using land cover data to predict floral resource availability for pollinators. I'm an author despite minimal input; the lead author based this on work by the last author, who I provided some guidance to when he was a postdoc. There are a few potentially interesting things in here. 1) Most pollinators don't make much honey, so their populations are limited by the time of year w/ the least food available (pollen and nectar). The methods here help you figure out those bottlenecks if you want to target habitat restoration to boost pollinator populations. 2) Plants vary a lot in how much nectar and pollen they make. Not every crop makes flowers that feed pollinators (likely obvious, but some crops and cover crops are harvested or terminated before flowering, and wind-pollinated plants don't have nectar). Trees produce a ton of nectar and pollen. 3) The paper looked at two different ways to map land cover, and surprisingly the simpler approach worked as well (similar error levels)! It's a good reminder to always question whether you need more complexity and accuracy. If you just have a garden and want more bees and other pollinators, this blog post I wrote may help: https://sciencejon.blogspot.com/2024/05/new-paper-on-mapping-pollinator.html
 

WETLANDS:
The latest report on the status of wetlands in the US (excluding AK and HI) is a bummer but has some useful info. Key summaries are in Fig 9 and Table 2, but in short on net 221,000 acres of wetlands were converted, mostly to ag and tree plantations followed by housing developments. But that net change hides that fact that we actually lost 670,000 acres of vegetated wetlands, with non-vegetated wetlands like ponds, sandbars, and mudflats increasing (but NOT providing nearly as much ecological value). The report calls for more coordination to achieve no net loss of wetlands, to update and improve the National Wetlands Inventory, develop and implement better wetland conservation and management (duh), and commit to long-term monitoring and adaptive management.


REFERENCES:

Balch, J. K., Iglesias, V., Mahood, A. L., Cook, M. C., Amaral, C., DeCastro, A., Leyk, S., McIntosh, T. L., Nagy, R. C., St. Denis, L., Tuff, T., Verleye, E., Williams, A. P., & Kolden, C. A. (2024). The fastest-growing and most destructive fires in the US (2001 to 2020). Science, 386(6720), 425–431. https://doi.org/10.1126/science.adk5737
 
Brisco, E., Kulinskaya, E., & Koricheva, J. (2023). Assessment of temporal instability in the applied ecology and conservation evidence base. Research Synthesis Methods, November, 1–15. https://doi.org/10.1002/jrsm.1691
 
Flitcroft, R. L., Abell, R., Harrison, I., Arismendi, I., & Penaluna, B. E. (2023). Making global targets local for freshwater protection. Nature Sustainability. https://doi.org/10.1038/s41893-023-01193-7
 
George, M. M., Platts, S. V., Berry, B. A., Miller, M. F., Carlock, A. M., Horton, T. M., & George, M. H. (2024). Effect of SeaFeed, a canola oil infused with Asparagopsis armata , on methane emissions, animal health, performance, and carcass characteristics of Angus feedlot cattle. Translational Animal Science, 8(August). https://doi.org/10.1093/tas/txae116
 
Greenspoon, L., Krieger, E., Sender, R., Rosenberg, Y., Bar-On, Y. M., Moran, U., Antman, T., Meiri, S., Roll, U., Noor, E., & Milo, R. (2023). The global biomass of wild mammals. Proceedings of the National Academy of Sciences, 120(10), 2017. https://doi.org/10.1073/pnas.2204892120

REPLY AND COUNTER-REPLY TO GREENSPOON:

  • Santini, L., Berzaghi, F., & Benítez-López, A. (2024). Total population reports are ill-suited for global biomass estimation of wild animals. Proceedings of the National Academy of Sciences, 121(4), 1–3. https://doi.org/10.1073/pnas.2308958121   
  • Greenspoon, L., Rosenberg, Y., Meiri, S., Roll, U., Noor, E., & Milo, R. (2024). Reply to Santini et al.: Total population reports are necessary for global biomass estimation of wild mammals. Proceedings of the National Academy of Sciences of the United States of America, 121(4), 1–2. https://doi.org/10.1073/pnas.2316314121

Jasechko, S., Seybold, H., Perrone, D., Fan, Y., Shamsudduha, M., Taylor, R. G., Fallatah, O., & Kirchner, J. W. (2024). Rapid groundwater decline and some cases of recovery in aquifers globally. Nature, 625(7996), 715–721. https://doi.org/10.1038/s41586-023-06879-8
 
Lang, M. W., Ingebritsen, J. C., & Griffin, R. K. (2024). Status and Trends of Wetlands in the Conterminous United States 2009 to 2019. U.S. Department of the Interior; Fish and Wildlife Service, Washington, D.C. 43 pp. https://www.fws.gov/project/2019-wetlands-status-and-trends-report

Langhammer, P. F., Bull, J. W., Bicknell, J. E., Oakley, J. L., Brown, M. H., Bruford, M. W., Butchart, S. H. M., Carr, J. A., Church, D., Cooney, R., Cutajar, S., Foden, W., Foster, M. N., Gascon, C., Geldmann, J., Genovesi, P., Hoffmann, M., Howard-McCombe, J., Lewis, T., … Brooks, T. M. (2024). The positive impact of conservation action. Science, 384(6694), 453–458. https://doi.org/10.1126/science.adj6598

Li, K., Fisher, J., Power, A., & Iverson, A. (2024). A map of pollinator floral resource habitats in the agricultural landscape of Central New York. One Ecosystem, 9. https://doi.org/10.3897/oneeco.9.e118634
 
Littlefield, C. E., Suraci, J. P., Kintsch, J., Callahan, R., Cramer, P., Cross, M. S., Dickson, B. G., Duncan, L. A., Fisher, J. R., Freeman, P. T., Seidler, R., Wearn, A., Andrews, K. M., Brocki, M., Dodd, N., Gagnon, J., Johnson, A., Krosby, M., Skroch, M., & Sutherland, R. (2024). Evaluating and elevating the role of wildlife road crossings in climate adaptation. Frontiers in Ecology and the Environment, 1–10. https://doi.org/10.1002/fee.2816
 
Pivello, V. R., Vieira, I., Christianini, A. V., Ribeiro, D. B., da Silva Menezes, L., Berlinck, C. N., Melo, F. P. L., Marengo, J. A., Tornquist, C. G., Tomas, W. M., & Overbeck, G. E. (2021). Understanding Brazil’s catastrophic fires: Causes, consequences and policy needed to prevent future tragedies. Perspectives in Ecology and Conservation, 19(3), 233–255. https://doi.org/10.1016/j.pecon.2021.06.005
 
Sutherland, W. J., Bennett, C., Brotherton, P. N. M., Butchart, S. H. M., Butterworth, H. M., Clarke, S. J., Esmail, N., Fleishman, E., Gaston, K. J., Herbert-Read, J. E., Hughes, A. C., James, J., Kaartokallio, H., Le Roux, X., Lickorish, F. A., Newport, S., Palardy, J. E., Pearce-Higgins, J. W., Peck, L. S., … Thornton, A. (2024). A horizon scan of global biological conservation issues for 2024. Trends in Ecology & Evolution, 39(1), 89–100. https://doi.org/10.1016/j.tree.2023.11.001
 
Trencher, G., Nick, S., Carlson, J., & Johnson, M. (2024). Demand for low-quality offsets by major companies undermines climate integrity of the voluntary carbon market. Nature Communications, 15(1), 6863. https://doi.org/10.1038/s41467-024-51151-w
 
UNEP-WCMC, 2024. State of the World’s Migratory Species. UNEP-WCMC, Cambridge, United Kingdom.
https://www.cms.int/en/publication/state-worlds-migratory-species-report
 
Wang, H., Liu, J., Klaar, M., Chen, A., Gudmundsson, L., & Holden, J. (2024). Anthropogenic climate change has influenced global river flow seasonality. Science, 383(6686), 1009–1014. https://doi.org/10.1126/science.adi9501


Sincerely,
 
Jon
 
p.s. I inherited that Christmas sweater from my dad, and typically only pull it out once a year for a Christmas sing-along

Tuesday, October 1, 2024

October 2024 science summary

Sylvester the hairless cat

Greetings,

My knee is still healing and as I write this I have COVID. So: I am again behind on proper science reading. BUT I have some fun AI content anyway plus one flashy new paper.

AI TO GENERATE PODCASTS?!
Many of you requested updates on important AI features and this month is a biggie. Google's Gemini Notebook (https://notebooklm.google/) which among other more established features turns a body of text into an NPR-style podcast (a blog about the feature is here: https://blog.google/technology/ai/notebooklm-audio-overviews/). 
 
I would share a direct link to the audio it produces to avoid the energy use of you all trying it on your own, but my employer's AI guidance doesn't let me do that, so I'll just say: watch a little less streaming video this week to reduce your carbon footprint, and give this a go. Just 1) upload a document to https://notebooklm.google, and 2) click Generate in "Deep dive conversation". Wow. The results are conversational, natural, and interesting, with relatively few hiccups / artifacts that I noticed (although not none), although it does consistently hype up each paper (both the magnitude and significance of results are exaggerated, albeit not quantitatively). I could see this being useful to help you digest that report you can't bring yourself to read while jogging instead. Not that you should ever trust an AI summary at this point to be accurate (please don't!) - but for legit reports it appears to be much better than not reading the report at all from my limited testing.

Here are the results of four quick tests: 

1. A colleague fed in a research report which was written for a lay audience already (https://www.pewresearch.org/data-labs/2024/05/23/electric-vehicle-charging-infrastructure-in-the-u-s/), and I was gobsmacked by the quality. Not as good as a legit pro quality podcast, but MUCH better than something I would put out and a hell of a good first draft.
2. What about a peer-reviewed science article which is much more technical and hard to read? I uploaded my 2nd favorite paper that I'm first author on (since my favorite is written in plain English already) which is about how spatial resolution impacts accuracy, cost and making the right decision: http://onlinelibrary.wiley.com/doi/10.1002/rse2.61/full Once again it did really surprisingly well. There was one weird audio screwup, and they focused a moderate amount on an unimportant finding but also had a line I loved: “sharper images leading to sharper insights” (meaning higher spatial resolution of satellite imagery is more accurate and makes for better decisions). Damn that's good!
3. OK, but what about a paper even a proper scientist would have a hard time slogging through? I literally searched all the notes I have written in my reference library notes for the phrase "hard to read" and found this doozy looking at how cow genetics affects methane emissions: https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005846 The writing is very technical BUT at least for a reader like me you can skim and sift out some high level conclusions so I was curious to see how it would perform. The answer is still quite well with one big caveat! The use of sire progeny groups was charmingly described as "like a bovine family reunion, but for science" and they had some great metaphors like how a microbe has a "key" to unlock the "lock" of some important sugar molecules. BUT they described the results as finding a MASSIVE and INSANE impact of genetics on methane and how it was a TOTAL GAME CHANGER. In fact, while the authors never clearly state this (though it's obvious in Fig 1), genetic impacts are MUCH smaller than the impact of diet (grass / forage vs. concentrated feed). So like a cow's stomach, this tool will regurgitate back what you put in w/o any filtering or warning.
4. What if you upload a blatantly false document? You guessed it - the tool performs the same way and makes it seem engaging and interesting. A colleague uploaded an Onion article and the tool did NOT waver or flag any parody or provide any warning, it just made it sound like real news. This one is pretty scary.

Note that there were literally no other prompts or edits to produce this, just upload a PDF and click "generate" which I find staggering. I would have believed that these were real podcasts w/ real people, and it definitely took the core content and made it interesting and engaging (albeit over-hyped). Hearing three of these in a row, there is some noticeable repetition in key phrases and style which will make my spidey-sense tingle if I hear similar podcasts out in the wild not attributed to Gemini Notebook.

As the always wise Bob Lalasz from Science+Story noted - this tool cannot (yet) simulate specific voices like a researcher or celebrity, and the output will quickly saturate and land as inauthentic. But at this moment it's both a tool that can provide some useful and engaging summaries, AND could be a way to make misinformation seem more appealing, as the Onion example shows.

Enough AI, here's a review of one actual paper I read w/o AI helping:

CATTLE AND CLIMATE CHANGE:
OK, for years people have been hyping the potential of a kind of seaweed (Asparagopsis) to reduce methane emissions in cattle. But the in vitro evidence was mixed - with potential toxicity and downsides a concern if the dose wasn't just right. George et al is a live trial with good news! They found methane emissions from cattle given an Asparagopsis additive were cut roughly in half compared to control, with 6.6% higher weight gain per unit of feed and no substantial impacts on quality or health (fat color maybe a bit better, tenderness maybe a bit worse). The methane reduction peaked at day 21 and declined afterwards, but since most cattle are in feedlots only ~3 months (ranging from 1.5-4) the decline after day 100 is pretty moot. That's a lot of potential! The only potential downsides were ~50% higher bromine residues in kidney and muscle (I couldn't quickly find guidance on safe levels). Caveats: 1) there were no conflicts declared but the authors appear to almost all work as feedlot consultants and it's single rather than double-blinded, 2) in the US the feedlot phase is only about 15% of the lifecycle emissions of a cow (and of that, some is from growing crops and nitrous oxide) so TOTAL impact on CO2e / kg beef is not as dramatic. Overall my take is 1) this should absolutely be tested and replicated more - anything that reduces the very high carbon of beef is worth pursuing. BUT 2) if this is marketed as "green beef" or license to avoid reductions, it could be net harmful for the climate. and 3) IF spraying this solution on grass worked similarly and didn't inhibit development of calves, the impact could be much higher (since ~80%ish of a cow's life is grazing prior to feedlot, and methane emissions are higher on grass than feed). So let's test that too. There's a blog about this at https://www.theguardian.com/australia-news/article/2024/aug/18/feeding-seaweed-supplement-to-cattle-halved-methane-emissions-in-australian-feedlot-study-finds

As always, if you know someone who wants to sign up to receive these summaries, they can do so at http://bit.ly/sciencejon (no need to email me).


REFERENCES:

Fisher, J. R. B., Acosta, E. A., Dennedy-Frank, P. J., Kroeger, T., & Boucher, T. M. (2018). Impact of satellite imagery spatial resolution on land use classification accuracy and modeled water quality. Remote Sensing in Ecology and Conservation, 4(2), 137–149. https://doi.org/10.1002/rse2.61

George, M. M., Platts, S. V., Berry, B. A., Miller, M. F., Carlock, A. M., Horton, T. M., & George, M. H. (2024). Effect of SeaFeed, a canola oil infused with Asparagopsis armata , on methane emissions, animal health, performance, and carcass characteristics of Angus feedlot cattle. Translational Animal Science, 8(August). https://doi.org/10.1093/tas/txae116

Roehe, R., Dewhurst, R. J., Duthie, C.-A., Rooke, J. A., McKain, N., Ross, D. W., Hyslop, J. J., Waterhouse, A., Freeman, T. C., Watson, M., & Wallace, R. J. (2016). Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance. PLOS Genetics, 12(2), e1005846. https://doi.org/10.1371/journal.pgen.1005846

Sincerely,
 
Jon
 
p.s. This hairless cat named Sylvester lives near me, is extremely friendly, and is as weird to touch as you might guess

Tuesday, July 2, 2024

July 2024 science summary

Baby bunny nibbling a weed

Hello,

I've just got two science articles this month, but also wanted a plug a book I found really interesting: The Culture Code by Daniel Coyle. There's not a lot of brand new content - he draws heavily on concepts of psychological safety and vulnerability (see Amy Edmondson), learning from failure, how to give effective feedback, ways to generate candor and tough love, making space for feedback, etc.

The reason this one stuck w/ me is that he has pretty compelling real world examples of organizations and leaders that embody some of the recommendations. One of his suggestions was also new to me and really resonates: "resist the temptation to reflexively add value." I've thought before about 1) whether or not my review or input can make something better and how much, and 2) whether I'd add enough value for it to be worth my time. But he notes that 3) every time you weigh in on something, you're missing a chance to express trust in the author and build their confidence that they don't NEED your input for it to be good enough. I'm still grappling with how to put this into practice, but the book is a fast read and I recommend it.

If you know someone who wants to sign up to receive these summaries, they can do so at http://bit.ly/sciencejon (no need to email me).


MAMMALS:
Greenspoon et. al 2023 is an attempt to estimate the biomass of all wild mammals on earth (combined), arriving at 60 Mt total: 20 Mt (million metric tons) on land (half from "even-hoofed" mammals, see FIg 2), and 40 Mt in oceans (23 Mt of which comes from baleen whales). But the kicker is that they estimate human biomass at 390 Mt, and livestock biomass at 630 Mt (420 Mt from cattle: which is more than all humans plus all wild land mammals). Fig 4 awkwardly tries to compare all mammal biomass on earth, showing how wild species have been squeezed. The wild mammal estimates mostly come from the IUCN red list which skews towards expert assessments of more threatened spp., and the numbers won't be "right" for several reasons (these estimates are hard, and the data are highly limiting). But it seems solid that humans and livestock substantially outweigh wild mammals.
There's a good critique of the paper (arguing that Greenspoon et al. underestimate biomass by a factor of 5.5) by Santini et al. here https://www.pnas.org/doi/10.1073/pnas.2308958121 and a reply from the Greenspoon authors pointing out why the methods used in the critique are also (differently) flawed: https://www.pnas.org/doi/10.1073/pnas.2316314121


PANTANAL / CATTLE RANCHING:
Junk and da Cunha 2012 argue that when ranchers clear trees and shrubs from grazing lands, that should not be equated with deforestation. They note that from the perspective of ranchers, all trees and shrubs within pastures (whether native or not) are "invasive species." It's unusual to use that language to describe the regeneration of trees in what used to be forest (as of ~250 years ago before cattle were introduced) but makes sense from the perspective of someone trying to keep land suitable for cattle (and they note the land was managed for thousands of years to promote other wild game species, making parts of the Pantanal a cultural landscape). Table 1 lists their recommended methods to clear some of the more common woody species. They also discuss how starting in the 1980s, money from a gold rush was used to drive higher-density cattle ranching using African grass species.


REFERENCES:
Greenspoon, L., Krieger, E., Sender, R., Rosenberg, Y., Bar-On, Y. M., Moran, U., Antman, T., Meiri, S., Roll, U., Noor, E., & Milo, R. (2023). The global biomass of wild mammals. Proceedings of the National Academy of Sciences, 120(10), 2017. https://doi.org/10.1073/pnas.2204892120

REPLY AND COUNTER-REPLY TO GREENSPOON:

  • Santini, L., Berzaghi, F., & Benítez-López, A. (2024). Total population reports are ill-suited for global biomass estimation of wild animals. Proceedings of the National Academy of Sciences, 121(4), 1–3. https://doi.org/10.1073/pnas.2308958121   
  • Greenspoon, L., Rosenberg, Y., Meiri, S., Roll, U., Noor, E., & Milo, R. (2024). Reply to Santini et al.: Total population reports are necessary for global biomass estimation of wild mammals. Proceedings of the National Academy of Sciences of the United States of America, 121(4), 1–2. https://doi.org/10.1073/pnas.2316314121

    
Junk, W. J., & Nunes da Cunha, C. (2012). Pasture clearing from invasive woody plants in the Pantanal: a tool for sustainable management or environmental destruction? Wetlands Ecology and Management, 20(2), 111–122. https://doi.org/10.1007/s11273-011-9246-y



Sincerely,
 
Jon
 
p.s. This is a baby rabbit nibbling a weed in my garden. We had a nest of even tinier ones born more recently, but this guy was the cutest of them all.

Thursday, January 25, 2024

December 2023 science summary

Anglerfish pumpkin / jack-o'-lantern

 Hi,


On Friday Nov 17, the earth was 2C warmer than historic pre-industrial average (1850-1900), and 1.17C over the 1991-2020 average. This does not mean the earth has warmed 2C yet! That would require a sustained set of temperatures high above average. But still not great news. https://wapo.st/3MLWDes

This month I have three science articles but am also sharing some informal thoughts about how scientists might want to consider using (and not using) generative artificial intelligence tools.

If you know someone who wants to sign up to receive these summaries, they can do so at http://bit.ly/sciencejon (no need to email me).

CLIMATE CHANGE:
Knauer et al. 2023 has good news - better modeling estimates forests could sequester more carbon than we thought. But it's likely very small good news. Their best case is 20% more "gross primary productivity" (GPP, energy captured by photosynthesis), BUT a) that's using an extremely unlikely 'worst case' cliamte scenario which is actually hard to achieve, (RCP8.5) and b) only a fraction of GPP ends up sequestered as carbon (see Cabon et al. 2022 for more). Since forests offset roughly 25% of annual human emissions, the results likely mean <1% of annual emissions could be offset. I'll take it, but we still need to reduce gross emissions as fast as possible.

CATTLE RANCHING:
Chiaravalloti et al. 2023 assessed how well cattle ranches in the Brazilian Pantanal (among the world's largest wetlands) aligned w/ Elinor Ostrom's principles (for sustainable use of natural resources, see Table 2 for a nice summary). They interviewed 49 cattle ranchers, other people working in the beef supply chain, conservationists, and policy makers. Flooding, very low stocking density, lack of transportation, and the fire regime all make ranching in the Pantanal unusual. They found the Pantanal ranches do well on the first 3 principles: clearly defined boundaries, appropriate rules for resource use reflecting local conditions, and collective decision making. But there is a lack of the other principles: limited monitoring, no graduated sanctions, lack of accessible conflict resolution, lack of recognition for self-governance on sustainability, and nested enterprises that coordinate governance and monitoring and the rest. They call for a series of specific recommendations to address these deficits, including celebrating early examples of things that are working well.

Gomes et al. 2023 is a case study in the Brazilian Pantanal assessing 14 cattle ranches (cow-calf operations) using the Fazenda Pantaneira Sustentável (FPS) tool. The tool assesses 1) financial performance (costs of management, inputs, labor, etc., along w/ gross income), 2) productive performance (which favors native grass forage availability and producing calves), and 3) environmental performance (landscape diversity conservation index, which favors diverse vegetation types that have been maintained on the ranch), and combined them into a composite score. Table 2 has the results and highlights how much variation there is across ranches. Table 3 has an easier to read narrative summary of how the ranches are performing. They recommend using the relative high performing ranches as baselines for what performance level the others should aspire to.

THOUGHTS ON GENERATIVE ARTIFICIAL INTELLIGENCE (AI):
I am in no way an expert on AI. I am a person who has played with a variety of tools, and is sometimes asked for my opinion. The thoughts here are my own, and don't reflect the views of my employer or anyone who actually knows what they're taking about. They are general guidance skewed by what I've tried, and the tools evolve fast so could already be wrong. Two things to keep in mind throughout - 1) when you ask AI for answers they often confidently provide wrong answers, and 2) don't put sensitive / non-public information in there as some of these tools have the right to reuse or share what you put in. Watch out for those!

With that caveat, I wanted to share some suggestions for how to use generative AI (including large language models [LLMs] like ChatGPT and Bard, plus image generating tools like DALL-E). Other kinds of AI are not included. I split use cases into three categories:

GREEN: relatively safe uses/ DO:

  • Reword emails / blogs / reports, including for length or tone or clarity. LLMs perform very well at producing text which is clear and understandable to a general audience, with few to no grammatical errors. It's also surprisingly good at adjusting emotional tone, e.g., doctors are using ChatGPT to write more empathetic emails to patients. Again, be wary of putting in sensitive info. A final edit and review for factual accuracy is essential. 
  • Use Elicit.com for screening a set of science paper PDFs (it produces a spreadsheet with summaries, methods, etc. which a researcher can use to decide where to start reading). Use “detailed summary” as the shorter summary leaves important stuff out (the link does to a detailed review I wrote of Elicit). This used to be free but they charge you now.
  • Help finding other kinds of information hard to find with traditional search engines. For example, a search for strategic planning frameworks for nonprofits (roughly similar to the conservation standards) was mostly unproductive, but similar queries to Bard produced an excellent science paper with a comparison between 5 frameworks.
    • Note that this only means looking for sources you will actually read, NOT asking it to pull out facts. It's a great way to find references you may otherwise miss.
  • Help finding hotels that meet criteria you can’t easily filter on in other travel sites (like quiet, dining options, offering special rates, etc.). Again - read reviews and the hotel website to verify the info, in some cases I was offered hotels that did not meet my criteria, but in other cases it helped me.
 
YELLOW: offers value but also some risk/ CAUTIOUSLY DO:
  • Look for key facts buried in long reports / science papers (either w/ ChatPDF or online LLMs) - then verify those facts are real / correct / actually in the source (ChatPDF will often tell you the correct page number for a factual assertion if asked). It is typically faster than reading long documents or searching through them (e.g.,  I used for the suites of IPCC AR6 reports). The 'cautiously' part is that I can't stress enough that these tools often make things up and provide fictional sources!
  • Summarize science papers or other long reports in plain language. Again, check any key points for veracity. Here's a long review comparing how ChatGPT summaries of papers compare to my own, and another one evaluating Elicit's short and detailed summaries of papers I co-authored.
  • Write sample code you either don't know how to write or that would take a long time. It may perform poorly and/or be hard to debug, but may be ‘good enough’ in cases where time is limited. On the other hand, in some cases it could introduce security and/or performance risks. This is best when you know how to code (and understand code you read) and are looking for sample code to start with.
  • Use Elicit.com to identify potential issues / problems with science papers. While existing functions around critiques of papers and methodological limitations or conflicts of interest do not work very well, in some cases they do work and have potential if refined. I'll say it again: verify anything it tells you.
  • List common arguments for or against a given topic. This can provide helpful context but should not be treated as definitive
  • Produce an initial outline for something like a paper or a report – suggesting possible topics and how to organize them as a way to stimulate thought and get started. My teacher friends also said it can be great for suggesting things to include in a syllabus.
 
RED: use cases to be avoided/ DO NOT:
  • Ask for facts and trust the results w/o carefully checking references (LLMs regularly fabricate false info and provide fictional references [hallucitations] for it)
  • Assume content provided (code, images, text) can be used w/o copyright issues. Often it cannot, and using a bit of LLM-generated content can screw w the copyright of the bigger report it goes into.
  • Assume LLMs will include caveats or methodological limitations when reporting results from reports (they generally do not)
  • Put sensitive, nonpublic, or other confidential text, data, or code into LLMs
  • Assume you know how the tools work. They change so fast you probably don't. Treat it as a black box which sometimes spits out candy, but sometimes you get those Harry Potter jelly beans that taste like vomit or earwax.


Again, please use the above as ideas you can try out and verify for yourself. Don't trust my judgment on AIs any more than you would trust their assessment of their limitations.


REFERENCES:

Cabon, A., Kannenberg, S. A., Arain, A., Babst, F., Baldocchi, D., Belmecheri, S., Delpierre, N., Guerrieri, R., Maxwell, J. T., McKenzie, S., Meinzer, F. C., Moore, D. J. P., Pappas, C., Rocha, A. V., Szejner, P., Ueyama, M., Ulrich, D., Vincke, C., Voelker, S. L., … Anderegg, W. R. L. (2022). Cross-biome synthesis of source versus sink limits to tree growth. Science, 376(6594), 758–761. https://doi.org/10.1126/science.abm4875

Chiaravalloti, R. M., Tomas, W. M., Akre, T., Morato, R. G., Camilo, A. R., Giordano, A. J., & Leimgruber, P. (2023). Achieving conservation through cattle ranching: The case of the Brazilian Pantanal. Conservation Science and Practice, September. https://doi.org/10.1111/csp2.13006

Gomes, E. G., Santos, S. A., Paula, E. S. de, Nogueira, M. A., Oliveira, M. D. de, Salis, S. M., Soriano, B. M. A., & Tomas, W. M. (2023). Multidimensional performance assessment of a sample of beef cattle ranches in the Pantanal from a data envelopment analysis perspective. Ciência Rural, 53(12), 1–12. https://doi.org/10.1590/0103-8478cr20220595

Knauer, J., Cuntz, M., Smith, B., Canadell, J. G., Medlyn, B. E., Bennett, A. C., Caldararu, S., & Haverd, V. (2023). Higher global gross primary productivity under future climate with more advanced representations of photosynthesis. Science Advances, 9(46), 24–28. https://doi.org/10.1126/sciadv.adh9444

Sincerely,
 
Jon
 
p.s. This anglerfish jack-o-lantern was carved by my wife and me; we got the pumpkin with a really long stem and wanted a theme that would make good use of it

Thursday, December 1, 2022

December 2022 science summary

Victoria sunrise

Happy December,


In the spirit of the paper on gratitude below: thank you all for helping me to be a better scientist and a better person. Almost every month I get a note or two from someone who found the summary useful, or who had a question / critique / idea that I learned from. That engagement has helped me push myself to keep doing these, which in terms helps me be a bit more well-read. So thank you!

Also, while they're too long to summarize briefly like I do with papers, I want to recommend the books "Think Again" by Adam Grant and "Noise" by Daniel Kahneman, Olivier Sibony, and Cass R. Sunstein. Taken together, they've given me a lot of ideas about how to get better at reevaluating my beliefs, improving how I review evidence and draw conclusions, and generate estimates. Email me if you want some notes I took on my favorite parts of each!


GRATITUDE:
As a follow-up to the Thanksgiving holiday, I wanted to share a review of a paper on gratitude by Wood et al. 2010. It's a broad review of research on the topic and fairly wonky, but I found a few things useful. I liked how table 1 lists complementary aspects of gratitude: noticing how grateful you are overall, feeling gratitude towards others, focusing on what you have (vs. what you lack), feelings of awe, expressing gratitude (internally and to others), being present, living to the fullest b/c of awareness that life is short, and feeling lucky when thinking about how things could be worse. They cover quite a lot of research on gratitude and how being more grateful is associated w/ better quality of life (although there's some question how much gratitude causes well-being vs. is just correlated). The biggest boost to feeling good came from writing a letter thanking someone and reading it to them in person, but keeping a daily diary of three things you're grateful for seems to be easier to keep up and helps you feel better for longer.


CLIMATE CHANGE
Reich et al. 2022 is an interesting experiment of how boreal forests might respond to 1.6C or 3.1C warming, using open-air heaters in an actual forest (as well as simulating reduced rainfall by covering some of the soil) to see how they respond. Conifers experienced slower growth (Fig 2) and higher mortality (Fig 1). How much varied by species, with balsam fir showing the worst impact. Compared to current conditions, warming or limited rain each reduced balsam fir growth by ~1/3, while the combination reduced growth by ~2/3. Seedling survival went down by ~40% at 1.6C, ~72% at 3.1C, and ~84% at 3.1C plus less rain. But others like jack pine had much smaller effects, and some trees like maples had similar survival rates and more growth under warming (even with less rain). So they predict that conifers will become less dominant, over the long term being replaced by deciduous trees but in the short term more likely replaced by invasive woody shrubs (since the deciduous trees aren't common enough to spread fast). There is an article about this written for general audiences at https://phys.org/news/2022-08-modest-climate-northernmost-forests.html


SUSTAINABLE RANCHING:
Santos et al. 2017 is an interesting paper on using fuzzy logic to assess beef sustainability in the Pantanal. As background - fuzzy logic doesn't mean 'sloppy reasoning' - it's actually a real thing which more or less centers on non-binary logic models. For example, old thermostats are non-fuzzy (they turn on when cold and turn off when warm enough), but newer ones are often fuzzy (adjusting fan speed, turning auxiliary heat on or off, etc. depending on performance). In this case, they take a ton of practical indicators, map each onto a 4 point scale, and combine them into a single "overall sustainability index" (see Figure 1). Check out Appendix I for the list of how well each indicator matched expert judgments.


OTTERS:
Valladares et al. 2022 used drones to figure out what kind of habitat giant otters in Peru most preferred. They found giant otters preferred oxbow lakes with the largest water surface area, the least floating vegetation (more open water), and more dense forest canopy cover along the banks of the lakes.



REFERENCES:
Reich, P. B., Bermudez, R., Montgomery, R. A., Rich, R. L., Rice, K. E., Hobbie, S. E., & Stefanski, A. (2022). Even modest climate change may lead to major transitions in boreal forests. Nature, 608(7923), 540–545. https://doi.org/10.1038/s41586-022-05076-3

Santos, S. A., de Lima, H. P., Massruhá, S. M. F. S., de Abreu, U. G. P., Tomás, W. M., Salis, S. M., Cardoso, E. L., de Oliveira, M. D., Soares, M. T. S., dos Santos, A., de Oliveira, L. O. F., Calheiros, D. F., Crispim, S. M. A., Soriano, B. M. A., Amâncio, C. O. G., Nunes, A. P., & Pellegrin, L. A. (2017). A fuzzy logic-based tool to assess beef cattle ranching sustainability in complex environmental systems. Journal of Environmental Management, 198, 95–106. https://doi.org/10.1016/j.jenvman.2017.04.076

Valladares, N. A., Pardo, A. A., Chiaverini, L., Groenendijk, J., Harrington, L. A., Macdonald, D. W., Swaisgood, R. R., & Barocas, A. (2022). High‐resolution drone imagery reveals drivers of fine‐scale giant otter habitat selection in the land‐water interface. Conservation Science and Practice, December 2021, 1–14. https://doi.org/10.1111/csp2.12786

Wood, A. M., Froh, J. J., & Geraghty, A. W. A. (2010). Gratitude and well-being: A review and theoretical integration. Clinical Psychology Review, 30(7), 890–905. https://doi.org/10.1016/j.cpr.2010.03.005


Sincerely,
 
Jon

Thursday, August 1, 2019

August 2019 science journal article summary


Photo from Mick Garratt

Greetings,

Hot weather and a vacation in the woods have me thinking about climate change and habitat conversion (with articles on deforestation, landscape conservation, biodiversity, and livestock sustainability).

If you know someone who wants to sign up to receive these summaries, they can do so at http://bit.ly/sciencejon

LANDSCAPE CONSERVATION:
Runting et al. 2019 argues that debates about 'land sparing' vs 'land sharing' miss an important point - good forest management is likely more important. They run several scenarios with different degrees of land sharing vs sparing, and conventional vs. improved management (reduced-impact logging, longer plantation rotation, and strictly enforcing protected areas). They saw the best outcomes with improved management and a mix of sparing and sharing (but favoring sparing, see Figure 4). Check out Figure 2 for what an 'optimal' scenario looks like compared to extreme sharing or sparing (but ignore the idea that tiny islands of protected areas or holes in larger ones are ideal - this is almost certainly an artifact). There's a blog on this one at https://nature4climate.org/news/headline-stories/cant-see-the-wood-for-the-trees-making-the-most-of-our-forests-for-biodiversity-and-wood-production/

Kennedy et al. 2019 calculates how modified by human activities land around the world is. While only 5% of land area was 'unmodified', most of the world was 'moderately modified.' The authors argue that ecoregions with moderate modification may be good candidates for high priority conservation action, because they tend to have some relatively intact lands near to highly modified lands (which thus may pose a threat in the near future). In particular, the tropical and subtropical dry broadleaf forests biome (mostly in Mexico, India, Argentina, & SE Asia) was found to be the most threatened (high conversion relative to protection). While they didn't include all threats (e.g. logging, invasive species, climate change, and more) these data can be used to evaluate the suitability of lands for protection. You can explore the findings and maps at http://gdra-tnc.org/current/ and you can download the data from http://s3.amazonaws.com/DevByDesign-Web/Apps/gHM/index.html


CLIMATE CHANGE:
Bastin et al. 2019 estimate 900 million ha of land could be reforested globally (excluding cropland and urban areas), which could store 205 Gt of carbon (752 Gt CO2e). Alternatively, they predict we'll lose 223 million ha of forest by 2050 under business as usual. This paper has been broadly criticized for overstating the role of reforestation in climate mitigation (while reforestation is important, the authors' conclusion that it's the most important solution is a fringe opinion), especially since they call for a focus on boreal plantings which reduces albedo relative to bare snow and ice (thus reducing the climate mitigation contribution). Here's a blog covering the paper including the critique: http://blogs.discovermagazine.com/crux/2019/07/10/reforestation-climate-change-plant-trees/#.XSdzAehJE2w

Diaz et al. 2018 looks at trade-offs between different forest management options for Douglas-fir in the NW US that could improve carbon storage. They compare managing the land to optimize net present value (NPV) to managing for sustained timber yield (with different levels of environmental management, e.g. longer rotations and some aspects of FSC certification). They find that environmental constraints boost carbon storage but hurt net present value. For example, one scenario had 26% more carbon, but 15% less timber and 21% lower NPV. They explore different policy options and challenges related to driving more carbon storage in timberlands.


DEFORESTATION:
Lambin et al. 2018 look at how effective company commitments to end deforestation are. The key finding is that public policy can significantly improve the likelihood of reducing deforestation relative to private action alone. For example, the Soy Moratorium combined sector-wide commitments with monitoring and public disincentives to clear forest in Brazil, with some success. They call for better company commitments (as called for by the Accountability Framework, https://accountability-framework.org/), and recommend public policies including: legal reform & enforcement, land tenure reform, working with people clearing the most forest, broadening scope (companies, commodities, & regions), incentivizing all actors in the supply chain to participate (e.g. fertilizer companies rarely engage in these commitments), improving traceability and transparency, and increasing demand for deforestation-free products.


LIVESTOCK SUSTAINABILITY:
Schader et al. 2015 looks at how shifting what we feed cattle could improve sustainability. The idea is to feed them less food humans could eat (like corn), and more grass and by-products we can't or don't eat (e.g. distiller's grains, bran, oilseed cake, etc.), which also limits the total amount of livestock which can be raised in this way. Figure 1 is a great overview of what this would mean, for example a big reduction in pigs and chicken and only modest increases in other livestock (that can eat grass). But note a cardinal data visualization sin: inconsistent scaling of bar charts (e.g. the soil erosion from water chart makes it look like their preferred scenario has only 42% the erosion of the reference scenario, but it actually has 88% the erosion) which means you have to look carefully. Still, it's an important concept to explore, and a useful contribution to the conversation.

What are the barriers to using livestock practices that reduce GHGs? Kipling et al. 2019 asked Welsh ranchers and other stakeholders in a series of interviews and workshops. They focused on the conceptual framework rather than the practices, splitting them into practical limitations (e.g. costs and infrastructure, see Figure 1), knowledge limitations (being unaware of options and how they work, see Figure 2), and cognitive limitations and interests (complexity and competing values, see Figures 3 & 4). There aren't any big surprises here, but it's a useful overview, especially the quotes from ranchers for each concept they present.


BIODIVERSITY:
Humphreys et al. 2019 looks at recent (since 1900) and historic plant extinction, and compares it to animal extinctions. The most interesting findings are that the IUCN Red List data on extinct plants are pretty poor (with 50 Red List species incorrectly listed as extinct, and 491 extinct species missing from the Red List), that 54% of plants reported extinct were later rediscovered (or reclassified to be the same as an extant species), that thousands of extant plant species are 'functionally extinct' (too few exist to form a viable population going forward), and that 55% of the 571 plant species that have gone extinct have done so since 1900. This is a short paper and worth reading.

REFERENCES:
Bastin, J.-F., Finegold, Y., Garcia, C., Mollicone, D., Rezende, M., Routh, D., … Crowther, T. W. (2019). The global tree restoration potential. Science, 365(6448), 76–79. https://doi.org/10.1126/science.aax0848

Diaz, D. D., Loreno, S., Ettl, G. J., & Davies, B. (2018). Tradeoffs in timber, carbon, and cash flow under alternative management systems for Douglas-Fir in the Pacific Northwest. Forests, 9(8), 1–25. https://doi.org/10.3390/f9080447

Humphreys, A. M., Govaerts, R., Ficinski, S. Z., Nic Lughadha, E., & Vorontsova, M. S. (2019). Global dataset shows geography and life form predict modern plant extinction and rediscovery. Nature Ecology & Evolution, 3(July). https://doi.org/10.1038/s41559-019-0906-2

Kennedy, C. M., Oakleaf, J. R., Theobald, D. M., Baruch-Mordo, S., & Kiesecker, J. (2019). Managing the Middle: A Shift in Conservation Priorities based on the Global Human Modification Gradient. Global Change Biology, (June 2018), 1–17. https://doi.org/10.1111/gcb.14549

Kipling, R. P., Taft, H. E., Chadwick, D. R., Styles, D., & Moorby, J. (2019). Challenges to implementing greenhouse gas mitigation measures in livestock agriculture: A conceptual framework for policymakers. Environmental Science and Policy, 92(November 2018), 107–115. https://doi.org/10.1016/j.envsci.2018.11.013

Lambin, F., Gibbs, H. K., Heilmayr, R., Carlson, K. M., Fleck, L., Garret, R., … Walker, N. (2017). The role of supply-chain initiatives in reducing deforestation. Nature Climate Change, 8(February), 109–116. https://doi.org/10.1038/s41558-017-0061-1

Runting, R. K., Ruslandi, Griscom, B. W., Struebig, M. J., Satar, M., Meijaard, E., … Venter, O. (2019). Larger gains from improved management over sparing–sharing for tropical forests. Nature Sustainability, 2(1), 53–61. https://doi.org/10.1038/s41893-018-0203-0

Schader, C., Muller, A., El-Hage Scialabba, N., Hecht, J., Isensee, A., Erb, K. H., … Niggli, U. (2015). Impacts of feeding less food-competing feedstuffs to livestock on global food system sustainability. Journal of the Royal Society Interface, 12(113). https://doi.org/10.1098/rsif.2015.0891



Sincerely,

Jon

p.s. If you'd like to keep track of what I write as well as what I read, I always link to both my informal blog posts and my formal publications (plus these summaries) at http://sciencejon.blogspot.com/

Monday, October 1, 2018

October 2018 science journal article roundup

Greetings,

Here is a short set of articles on potato cultivation, groundwater, and cattle and rangelands.

If you know someone who wants to sign up to receive these summaries, they can do so at http://eepurl.com/diB0nr

POTATO CULTIVATION:
Drakopolous et al. 2016 found that reduced tillage for potatoes led to 13% lower yields (smaller tubers) but also led to higher quality and nitrogen efficiency. The quality boost wasn't enough to offset yield loss and result in net economic benefit from reduced tillage.

Myrick 2016 is a masters thesis investigating adoption (and abandonment) of a potato variety resistant to late blight (C-88) in Yunnan, China. They found smaller farmers and those closer to cities were less likely to grow it, although they noted access to seed is very limited so decisions may largely be driven by which varieties extension agents promote. The appendix has some interesting (and at times, conflicting) data on farmer perceptions.

GROUNDWATER:
Jasechko et al. 2017 makes two important points about groundwater. The first is that between 42-85% of groundwater in the upper 1 km of the ground is over 12,000 years old, as is more than half the water pumped from deeper than 250m (highlighting challenges with pumping out "fossil" water which will be very slow to recharge). The other is that while the water is very old,  half of the wells showed contamination with tritium (a radioactive isotope mostly present in the environment from nuclear weapons and testing, showing relatively recent contamination). In other words, groundwater which took millennia to recharge and get clean is being contaminated more rapidly.
You can read a blog about this one: http://www.bbc.com/news/science-environment-39715738

RANGELANDS / CATTLE / REMOTE SENSING:
Reeves and Baggett 2014 developed a relatively simple way to assess rangeland degradation using remote sensing. Essentially they compare rangelands to reference conditions (all rangelands within similar ecological classifications), and found relatively little degradation (with degradation trends almost undetectable). They list several reasons for this in the discussion, but from other work in this space I've read it seems that estimating grassland productivity and degradation remotely is fundamentally challenging and limited (especially without field data to calibrate on), and NDVI is not an ideal tool for grasslands for several reasons. Caution could be taken before assuming relatively simple remote sensing estimates of grassland condition are accurate and actionable.

Reeves et al. 2017 predicts how climate change will affect cattle in the western U.S., considering forage (quantity, interannual variability, and vegetation types) and hear stress. They expect more forage in the north, less woody plants and more grass (in general), more variation in forage quantity year to year, and more heat sress (starting 2020-2030), which taken together means more vulnerability of cattle in most places (especially in the Southwest). In northern areas, the impacts of heat stress are expected to offset the benefits of more forage (with some exceptions). The two top maps in Figure 3 has a good summary of net impacts on cattle by 2060 and 2100, with yellow to red indicating negative effects, and green to blue indicating positive ones.

REFERENCES:
Drakopoulos, D., Scholberg, J. M. S., Lantinga, E. A., & Tittonell, P. A. (2016). Influence of reduced tillage and fertilization regime on crop performance and nitrogen utilization of organic potato. Organic Agriculture, 6(2), 75–87. https://doi.org/10.1007/s13165-015-0110-x

Jasechko, S., Perrone, D., Befus, K. M., Bayani Cardenas, M., Ferguson, G., Gleeson, T., … Kirchner, J. W. (2017). Global aquifers dominated by fossil groundwaters but wells vulnerable to modern contamination. Nature Geoscience, (April), 1–6. https://doi.org/10.1038/ngeo2943

Myrick, S. N. B. (2016). An Economic Impact Assessment of Cooperation-88 Potato Variety in the Yunnan Province of China. Virginia Polytechnic Institute and State University.

Reeves, M. C., & Baggett, L. S. (2014). A remote sensing protocol for identifying rangelands with degraded productive capacity. Ecological Indicators, 43, 172–182. https://doi.org/10.1016/j.ecolind.2014.02.009

Reeves, M. C., Bagne, K. E., & Tanaka, J. (2017). Potential Climate Change Impacts on Four Biophysical Indicators of Cattle Production from Western US Rangelands. Rangeland Ecology and Management, 70(5), 529–539. https://doi.org/10.1016/j.rama.2017.02.005


Sincerely,

Jon

p.s. as a reminder, you can search all of the science articles written by TNC staff (that we know of) here http://www.conservationgateway.org/ConservationPlanning/ToolsData/sitepages/article-list.aspx